Semester | Mand. | Option | Filières |
x | |||
E | x | ||
MA2, MA4 | x | C E | |
MA4 | x | C E |
Lecture | 2 weekly |
Project | 2 weekly |
Study plan | Semester | Mand. | Option | Filières |
Bioingénierie - master 2020-21 | MA4 | x | C E | |
EDEE - Electrical Engineering 2020-21 | x | |||
Ingénierie des sciences du vivant 2020-21 | MA2 | x | C E | |
Ingénierie des sciences du vivant 2020-21 | MA4 | x | C E | |
Mineur : Biotechnologie 2020-21 | E | x | ||
Sciences et technologies du vivant Master 2020-21 | MA4 | x | C E |
Cursus | Sem. | Type |
---|---|---|
Bioengineering | MA4 | Opt. |
Biotechnology minor | E | Opt. |
Electrical Engineering | Opt. | |
Life Sciences Engineering | MA2, MA4 | Opt. |
Sciences du vivant | MA4 | Opt. |
To investigate biological processes, bioimage informatics emerges as a growing field on the interface between microscopy, signal-processing, and computer science. The recent microscopes are producing large volumes of high-resolution multidimensional data (up to 5D). Therefore, algorithms and software tools are needed to automatically extract quantitative data from these images.
The course gives the theoretical concepts and practical aspects of the most common image reconstruction and image analysis techniques. It explains how to code algorithms and to deploy software tools to build an automatic analysis workflow (mainly in ImageJ/Fiji). The lecture is tailored to the needs of life sciences and driven by biological questions.
Addressed topics include (but not restricted to): presentation of microscopy modalities, digital images, multi-dimensional data (3D, time, multiple channels) manipulation, 3D image-processing algorithms, 5D visualization, reconstruction, deconvolution, denoising, stitching, visual feature detection, segmentation, active contours, image analysis workflow, pixel classification, machine learning, and tracking for building a cell lineage.
The course is composed of lectures, workshops with the state-of-the-art software packages, computer sessions (programmation) and a mini-project. A personal laptop is recommended to run (open-source) bioimage software packages.
Bioimage, microscopy, image processing, image reconstruction, image analysis, visualization, multidimensional data analysis, learning
Lecturing with demonstration, workshops, computer laboratories, hands-on
Mini-project during the semester (50%) and a written session exam (50%)
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Projet
Project
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
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Session été
Session summer
ETE
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optionnel
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Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Projet
Project
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
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Session été
Session summer
ETE
ETE
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Projet
Project
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Hour(s) per week x 14 weeks
H hebdo
H hebdo
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Session été
Session summer
ETE
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optionnel
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Cours
Lecture
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Hour(s) per week x 14 weeks
H hebdo
H hebdo
Projet
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Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
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Session summer
ETE
ETE
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optionnel
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Hour(s) per week x 14 weeks
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H hebdo
Projet
Project
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Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
Written
Session été
Session summer
ETE
ETE
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Projet
Project
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
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ETE
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