Semester | Mand. | Option | Filières |
BA6 | x | ||
E | x | ||
MA2, MA4 | x | K |
Lecture | 2 weekly |
Exercises | 2 weekly |
Study plan | Semester | Mand. | Option | Filières |
Ingénierie des sciences du vivant 2022-23 | BA6 | x | ||
Ingénierie des sciences du vivant 2022-23 | MA2 | x | K | |
Ingénierie des sciences du vivant 2022-23 | MA4 | x | K | |
Minor : Physics of living systems | E | x |
Cursus | Sem. | Type |
---|---|---|
Life Sciences Engineering | BA6, MA2, MA4 | Opt. |
Physics of living systems minor | E | Opt. |
Recently, biology has become more and more a data science. For instance, progress in sequencing has caused an explosion of available genome sequences. How can we make sense of such data and harness it in order to understand biological processes in a quantitative way? In many cases, biological data can be understood as being sampled from distributions of random variables. This course will first show the importance of randomness in biology. Then it will introduce some ways of extracting information from biological data, of assessing models and of approximately inferring the probability distributions underlying biological data. Some notions of statistics, information theory and statistical physics will be introduced, always with concrete applications to biological data in mind. Problems and numerical projects will allow students to apply the methods to real biological data. The course will be organized as follows:
Part I: Randomness in biological processes and biological data
Part II: Extracting information from biological data
Biological data, data science, sequencing data, neuroscience, population genetics, random variable, random walk, information theory, statistical physics, entropy, mutual information, inference, dimensionality reduction.
Analysis; probability and statistics; linear algebra; general physics; programming.
Introductory machine learning.
Lectures, exercises, programming labs.
Written final exam during the exam session, graded numerical mini-project.
Reference textbooks:
More advanced textbooks:
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
Written
Session été
Session summer
ETE
ETE
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
Written
Session été
Session summer
ETE
ETE
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
Written
Session été
Session summer
ETE
ETE
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Ecrit
Written
Session été
Session summer
ETE
ETE
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