Semester | Mand. | Option | Filières |
H | x | ||
MA1, MA3 | x | ||
MA1, MA3 | x | A | |
MA1, MA3 | x | D E |
Lecture | 2 weekly |
Exercises | 1 weekly |
Study plan | Semester | Mand. | Option | Filières |
Génie chimique et biotechnologie 2021-22 | MA1 | x | ||
Génie chimique et biotechnologie 2021-22 | MA3 | x | ||
Ingénierie des sciences du vivant 2021-22 | MA1 | x | D E | |
Ingénierie des sciences du vivant 2021-22 | MA3 | x | D E | |
Mineur : Biotechnologie 2021-22 | H | x | ||
Mineur : Systems engineering 2021-22 | H | x | ||
Science et ingénierie computationelles 2021-22 | MA1 | x | A | |
Science et ingénierie computationelles 2021-22 | MA3 | x | A |
Cursus | Sem. | Type |
---|---|---|
Biotechnology minor | H | Opt. |
Computational science and Engineering | MA1, MA3 | Opt. |
Ing.-chim. | MA1, MA3 | Opt. |
Life Sciences Engineering | MA1, MA3 | Opt. |
Systems Engineering minor | H | Opt. |
The topics of the course include:
Therefore, the course will introduce the following methods:
Part of the course is a computer laboratory were these methods are applied to characteristic problems.
Systems biology, system engineering, metabolic networks, omics-data, thermodynamics, metabolc engineering, stochastic modeling, agent-based modeling, particle-based modeling, parameter estimation.
Analysis I-III, linear algebra, probability and statistics, physical chemistry, programming essentials.
The building of working groups will make it possible for people with partial knowledge in these fields to contribute depending on their formation.
For deeper understanding into the methods thought in this class we recommend the following courses:
SV courses:
ChemE courses:
For the computational exercises, MATLAB® and PYTHON will be the platforms of choice.
An introductory session on and the platforms and software used is part of the course.
Teaching in classroom, paper reviews, project.
Presentations and critical analysis of papers.
Project.
- Exercises (50%)
- Final project presentation (50%)
Bibliography Primary and recommended
A First course in Systems Biology, Eberhard O. Voit 2012.
Systems Biology, By Edda Klipp et al. Wiley-Blackwell 2009.
Fundamentals of Systems Biology: From Synthetic Circuits to Whole-Cell Models, by Markus Covert
Modeling Differential Equations in Biology, by Clifford H. Taubes. Prentice Hall 2000.
An Invitation to Biomathematics, Raina Robeva James Kirkwood Robin Davies Leon Farhy Boris Kovatchev Martin Straume Michael Johnson
Foundations of System Biology, Edited by Hiraoki Kitano. MIT Press 2001
An Introduction to Systems Biology: Design Principles of Biological Circuits, by Uri Alon. Chapman and Hall/CRC 2006.
Computational Modeling of Genetic and Biochemical Networks, by James M. Bower and Hamid Bolouri. Bradford 2004.
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
optionnel
optionnel
Cours
Lecture
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Exercices
Exercises
Heure(s) hebdo x 14 semaines
Hour(s) per week x 14 weeks
H hebdo
H hebdo
Pendant le semestre
During the semester
Session hiver
Session winter
HIV
HIV
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FO_debut
[inline]=›  
FO_fin
HTML_debut
›  
HTML_fin
JS_debut
\x26#x203A;\x26#160;\x26#160;
JS_fin
CODE148292899
BOOLEAN_Symbol
BaliseJS_debut
\x5bEPSILON\x5d
BaliseJS_fin
Balise_debut
[EPSILON]
Balise_fin
FO_debut
[inline]=Ε
FO_fin
HTML_debut
Ε
HTML_fin
JS_debut
\x26#917;
JS_fin
BALISETXT_SAUT
BOOLEAN_Symbol
BaliseJS_debut
\x5bbr\x2f\x5d
BaliseJS_fin
Balise_debut
[br/]
Balise_fin
FO_debut
FO_fin
HTML_debut
<br/>
HTML_fin
JS_debut
\x3cbr\x2f\x3e
JS_fin