110 http://isa.epfl.ch/imoniteur_ISAP/ itffichecours.txt?path=EPFL.Etu.FicheCours.HeaderFR itffichecours.txt?path=EPFL.Etu.FicheCours.GlobalNav_js fr 2026 3138250313 3138250313 2301874614 2301874614 0 0 Neuro-X NX SV Faculté des sciences de la vie School of Life Sciences !itffichecours.htm?ww_i_matiere=3123290358&ww_x_anneeAcad=2301874614&ww_i_section=3138250313&ww_i_niveau= 1696552884 1696552963 2023-2024 COURSE BOOKLET NX-450 Computational neurosciences: biophysics Computational neurosciences: biophysics Lecturers Romani Armando Language of teaching English Cursus Computational Neurosciences minor(2023-2024, Mineur : Neurosciences computationnelles 2023-24)
Life Sciences Engineering(2023-2024, SV - Master 2022)
Life Sciences Engineering(2023-2024, SV - Master 2023)
Neuro-X minor(2023-2024, Mineur : Neuro-X 2023-24)
Neuro-X(2023-2024, SNX - Master 2022)
Neuro-X(2023-2024, SNX - Master 2023)
Neuroprosthetics minor(2023-2024, Mineur : Neuroprosthétiques 2023-24)
SemesterMand.OptionFilières
Hx
MA1, MA3x
 Credits 5 Session Winter Workload 150h Exam Written Number of positions Semester Fall Weeks 14 Hours 4 weekly
Courses 2 weekly
Exercises 2 weekly
Study planSemesterMand.OptionFilières
Ingénierie des sciences du vivant 2023-24MA1x
Ingénierie des sciences du vivant 2023-24MA3x
Mineur : Neuro-X 2023-24Hx
Mineur : Neuroprosthétiques 2023-24Hx
Mineur : Neurosciences computationnelles 2023-24Hx
Neuro-X 2023-24MA1x
Neuro-X 2023-24MA3x
Cursus Sem. Type
Computational Neurosciences minor H Opt.
Life Sciences Engineering MA1, MA3 Opt.
Neuro-X minor H Opt.
Neuro-X MA1, MA3 Opt.
Neuroprosthetics minor H Opt.
Summary The course introduces students to a synthesis of modern neuroscience and state-of-the-art data management, modelling and computing technologies with a focus on the biophysical level. Content

The course introduces masters students to a synthesis of modern neuroscience and state-of-the-art data management, modelling and computing technologies. Following fundamental structural and functional building blocks of the mammalian brain from cells to circuits, the course teaches applied biophysical modeling for each of these building blocks and showcases applications thereof in modern neuroscience. Accordingly, the course covers a number of key technologies, including 1) how neuroscience data is acquired, organized and integrated, 2) data-driven modeling and validation, 3) simulation and analysis technologies.

 Keywords

data management, biophysically detailed modeling, scientific computing, simulation

 Learning Prerequisites Important concepts to start the course
  • general knowledge on cellular neuroscience
  • experience in elementary programming (preferentially python)

 

 Learning Outcomes By the end of the course, the student must be able to:
  • Interpret discrepancies between experimental findings
  • Assess / Evaluate different level of detail formulations of models
  • Integrate biological facts into detailed neuron and tissue models
  • Apply model concepts in simulations
  • Exploit standard modelling and simulation software
  • Analyze model predictions
  • Explain formalisms and approaches in simulation software
 Teaching methods

The course will take place in presence on the EPFL campus.

Structure: each week there will be

  • 2x45min lecture
  • 45min interactive discussion with the teachers & TAs
  • 45min introduction of homework exercises, Q&A, group work (TAs present)

Exercises

  • practical programming/problem solving on topics from the lectures
  • done in groups, which remain for the entire semester
  • are graded on a weekly basis

 

 Expected student activities
  • Students attend lectures
  • Students actively participate in the discussion on the topics of the lecture in the discussion session
  • Students complete weekly practical programming assignments relevant to the week's lecture in groups
  • Students write final exam in exam period

 

 Assessment methods
  • Written exam: 70%
  • Continuous control (homework): 30%
 Resources Moodle Link Neuro-X, 2023-2024, Master semestre 1 Neuro-X, 2023-2024, Master semester 1 Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Master semestre 1 MA1 HIVER Master semester 1 MA1 Neuro-X NX Neuro-X NX
Neuro-X NX Neuro-X NX
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Neuro-X, 2023-2024, Master semestre 3 Neuro-X, 2023-2024, Master semester 3 Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Master semestre 3 MA3 HIVER Master semester 3 MA3 Neuro-X NX Neuro-X NX
Neuro-X NX Neuro-X NX
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Ingénierie des sciences du vivant, 2023-2024, Master semestre 1 Life Sciences Engineering, 2023-2024, Master semester 1 Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Master semestre 1 MA1 HIVER Master semester 1 MA1 Ingénierie des sciences du vivant SV Life Sciences Engineering SV
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Ingénierie des sciences du vivant, 2023-2024, Master semestre 3 Life Sciences Engineering, 2023-2024, Master semester 3 Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Master semestre 3 MA3 HIVER Master semester 3 MA3 Ingénierie des sciences du vivant SV Life Sciences Engineering SV
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Mineur en Neuro-X, 2023-2024, Semestre automne Neuro-X minor, 2023-2024, Autumn semester Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Semestre automne H HIVER Autumn semester H Mineur en Neuro-X MIN_NX Neuro-X minor MIN_NX
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Mineur en Neuroprosthétiques, 2023-2024, Semestre automne Neuroprosthetics minor, 2023-2024, Autumn semester Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Semestre automne H HIVER Autumn semester H Mineur en Neuroprosthétiques MIN_NEUPRO Neuroprosthetics minor MIN_NEUPRO
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
Mineur en Neurosciences computationnelles, 2023-2024, Semestre automne Computational Neurosciences minor, 2023-2024, Autumn semester Ecole polytechnique fédérale de Lausanne EPFL Ecole polytechnique fédérale de Lausanne EPFL 2023-2024 Semestre automne H HIVER Autumn semester H Mineur en Neurosciences computationnelles MIN_NEUR_COMP Computational Neurosciences minor MIN_NEUR_COMP
optionnel optional
2 Cours Courses Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
2 Exercices Exercises Heure(s) hebdo x 14 semaines Hour(s) per week x 14 weeks H hebdo H hebdo Romani Armando 250882
Ingénierie des sciences du vivant SV Life Sciences Engineering SV
3123290358 Computational neurosciences: biophysics Computational neurosciences: biophysics 5
Ecrit Written Crédit Credits 5 Session hiver Session winter HIV HIV
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